Folders tree seems corrupted when connected to PC
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I frequently connect my Kindle 4 to the pc in order to transfer files. For my surprise, when I did it now, my directory structure in the Kindle seems to be corrupted. There's no more subfolders under the documents folder, no more screen saver and a lot of strange files like "trashes" and the like are showing up. The only two folders that appear are: Documents ( with no subfolders as before) and another empty folder " Active-Content_Data (empty). The device seems to be working well except for the screen saver that is not working. I did a "reset factory" but didn't help.
What can I do to fix this problem and recovery the original system and file structure?
Thanks for your help.